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ecological engineering to harness evolution

ecological engineering to harness evolution
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DataCite: get your bibliographic references automatically by providing DOIs.

By Miguel A. Fortuna in Our computational toolbox on 08 Jun 2020

Getting your bibliographic references from DOIs, appropriately formatted to the journal you are planning to submit your manuscript.…

PURL: getting permanent addresses to access the files you share.

By Miguel A. Fortuna in Our computational toolbox on 25 May 2020

You should create a persistent address for sharing files with your colleagues on the web when you are not sure about where they will be located in your server.…

Docker Hub: pulling and pushing container images to a public respository

By Miguel A. Fortuna in Our computational toolbox on 18 May 2020

Learn how to use Docker's container registry (Doker Hub) to find official images and host your own for public or private use.…

Docker: software that includes everything needed to run an application.

By Miguel A. Fortuna in Our computational toolbox on 11 May 2020

Docker is a container of software that includes everything needed for an application to run isolated from the operating system. In this post we will walk you through the installation process.…

Zenodo: a catch-all repository for your research.

By Miguel A. Fortuna in Setting up our lab on 04 May 2020

Zenodo is a general-purpose open-access repository that assign a persistent digital object identifier (DOI) to any research digital material. We show how to create a release of a repository stored in GitHub and upload it into Zenodo.…

Setting up host-parasite coevolutionary experiments in Avida.

By Miguel A. Fortuna in Our research on 27 Apr 2020

Digital coevolution between hosts and parasites resembles the coevolutionary dynamics among bacteria and phages. By following this tutorial you will be able to set up and run coevolutionary experiments in Avida (i.e., the most widely-used software platform for studying evolution in action).…

Digital evolution: Avida as a software platform for studying evolution in action.

By Miguel A. Fortuna in Our research on 20 Apr 2020

Digital evolution is a form of evolutionary computation in which self-replicating computer programs—digital organisms—evolve within a user-defined computational environment. Avida is the most widely used software platform for research in digital evolution.…

Neo4j graph databases: working from Jupyterlab.

By Miguel A. Fortuna in Setting up our lab on 13 Apr 2020

Neo4j is a graph database that uses graph structures for semantic queries with nodes, edges, and properties to represent and store data. We will briefly describe the open source packages, written in Python and R, that we use in our lab to connect Neo4j databases from our JupyterLab server.…

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