We have extended the functionality of the rdf4r library, developed for working with Resource Description Framework (RDF) data in the R programming environment, to improve performance when uploading lots of RDF triples to a graphDB triplestore hosted in a remote server.…
Getting your bibliographic references from DOIs, appropriately formatted to the journal you are planning to submit your manuscript.…
You should create a persistent address for sharing files with your colleagues on the web when you are not sure about where they will be located in your server.…
Learn how to use Docker's container registry (Doker Hub) to find official images and host your own for public or private use.…
Docker is a container of software that includes everything needed for an application to run isolated from the operating system. In this post we will walk you through the installation process.…
Digital coevolution between hosts and parasites resembles the coevolutionary dynamics among bacteria and phages. By following this tutorial you will be able to set up and run coevolutionary experiments in Avida (i.e., the most widely-used software platform for studying evolution in action).…
Digital evolution is a form of evolutionary computation in which self-replicating computer programs—digital organisms—evolve within a user-defined computational environment. Avida is the most widely used software platform for research in digital evolution.…
Neo4j is a graph database that uses graph structures for semantic queries with nodes, edges, and properties to represent and store data. We will briefly describe the open source packages, written in Python and R, that we use in our lab to connect Neo4j databases from our JupyterLab server.…
The LaTex extension for JupyterLab allows for live-editing of LaTeX documents.…
The JupyterLab GitLab extension allows lab members to select GitLab organizations and users, browse their repositories, and open the files in those repositories. If those files are notebooks, we can run them just as you would any other notebook.…