GitLab CI/CD: pipeline for the R package avidaR
We have created a Pipeline for the R package avidaR which is launched every time we upload some changes to our GitLab remote repository.…
pyLODE: an OWL ontology documentation tool
pyLODE is a python tool based on LODE that makes owl ontologies human-readable. It converts an owl file into a html page where the IRIs, descriptions, domain and ranges of the classes, object properties, and datatype properties can be easily read and visualized.…
rdf4r library: build your semantic RDF database from R
We have extended the functionality of the rdf4r library, developed for working with Resource Description Framework (RDF) data in the R programming environment, to improve performance when uploading lots of RDF triples to a graphDB triplestore hosted in a remote server.…
DataCite: get your bibliographic references automatically by providing DOIs.
Getting your bibliographic references from DOIs, appropriately formatted to the journal you are planning to submit your manuscript.…
PURL: getting permanent addresses to access the files you share.
You should create a persistent address for sharing files with your colleagues on the web when you are not sure about where they will be located in your server.…
Docker Hub: pulling and pushing container images to a public respository
Learn how to use Docker's container registry (Doker Hub) to find official images and host your own for public or private use.…
Docker: software that includes everything needed to run an application.
Docker is a container of software that includes everything needed for an application to run isolated from the operating system. In this post we will walk you through the installation process.…
Setting up host-parasite coevolutionary experiments in Avida.
Digital coevolution between hosts and parasites resembles the coevolutionary dynamics among bacteria and phages. By following this tutorial you will be able to set up and run coevolutionary experiments in Avida (i.e., the most widely-used software platform for studying evolution in action).…