GitLab CI/CD: pipeline for the R package avidaR
We have created a Pipeline for the R package avidaR which is launched every time we upload some changes to our GitLab remote repository.…
pyLODE: an OWL ontology documentation tool
pyLODE is a python tool based on LODE that makes owl ontologies human-readable. It converts an owl file into a html page where the IRIs, descriptions, domain and ranges of the classes, object properties, and datatype properties can be easily read and visualized.…
rdf4r library: build your semantic RDF database from R
We have extended the functionality of the rdf4r library, developed for working with Resource Description Framework (RDF) data in the R programming environment, to improve performance when uploading lots of RDF triples to a graphDB triplestore hosted in a remote server.…
Scientific knowledge should be semantically encoded: a graph of nanopublications.
Only with the adquisition of meaning we adquire knowledge. We briefly explain here an approach to use and link nanopublications (i. e., a linked data format for scholarly data publishing) as a unifying framework to represent knowledge in a semantic way.…
Arthur Schopenhauer’s "On authorship and style".
Should peer review stop being anonymous? Inspired by Arthur Schopenhauer’s "On authorship and style", I now sign my reviews. I would like to share here some excerpts on anonymity in literary journals from this memorable essay.…
Our desktop computers: Raspberry Pi 4 + 2 vertical monitors.
We do not need powerful desktop computers in our lab, just single connection points in the cloud. Learn how to build a silent, energy-efficient, and dual display workspace.…
Ontology for Avida: a computational approach for performing experimental evolution on digital organisms.
The Ontology for Avida project is developing an integrated vocabulary for the description of the most widely used computational approach for performing experimental evolution on digital organisms.…
DataCite: get your bibliographic references automatically by providing DOIs.
Getting your bibliographic references from DOIs, appropriately formatted to the journal you are planning to submit your manuscript.…