Our desktop computers: Raspberry Pi 4 + 2 vertical monitors.
We do not need powerful desktop computers in our lab, just single connection points in the cloud. Learn how to build a silent, energy-efficient, and dual display workspace.…
Zenodo: a catch-all repository for your research.
Zenodo is a general-purpose open-access repository that assign a persistent digital object identifier (DOI) to any research digital material. We show how to create a release of a repository stored in GitHub and upload it into Zenodo.…
Neo4j graph databases: working from Jupyterlab.
Neo4j is a graph database that uses graph structures for semantic queries with nodes, edges, and properties to represent and store data. We will briefly describe the open source packages, written in Python and R, that we use in our lab to connect Neo4j databases from our JupyterLab server.…
JupyterLab extensions: LaTeX.
The LaTex extension for JupyterLab allows for live-editing of LaTeX documents.…
JupyterLab extensions: GitLab.
The JupyterLab GitLab extension allows lab members to select GitLab organizations and users, browse their repositories, and open the files in those repositories. If those files are notebooks, we can run them just as you would any other notebook.…
JupyterLab extensions: GitHub.
The JupyterLab GitHub extension allows lab members to select GitHub organizations and users, browse their repositories, and open the files in those repositories. If those files are notebooks, we can run them just as you would any other notebook.…
JupyterLab extensions: Git as a Version Control System.
Git, as a version control system, allows lab members to revert and go back to an older version of the code. Moreover, sometimes multiple members are working in parallel on the same code, so Git is needed to ensure there are no code conflicts between them.…
JupyterLab: getting your work done from anywhere.
JupyterLab is a web-based interactive development environment for Jupyter notebooks, code, and data. By deploying it with JupyterHub in our server, lab members can work from the office, home or their favorite coffee shop, using a desktop computer, laptop, tablet or smartphone.…
Nextcloud: getting your data stored safely in your own cloud.
Nextcloud allows your lab members to have all their files always accessible via the Internet, from wherever they are, and share them with their colleagues.…
Working in the cloud.
In our lab we do things differently. We work in the cloud. This means the data and the applications you need to analyze them are available anytime from anywhere.…