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Author 24 Posts
Miguel A. Fortuna

Miguel A. Fortuna

Our computational biology lab harnesses evolution by engineering species interactions to help fight human diseases. Website Twitter
ecological engineering to harness evolution
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Docker image for the Avida digital evolution software platform

By Miguel A. Fortuna in Our computational toolbox on 08 Sep 2022

If you work on Windows and are interested in using Avida as a platform for studying evolution, you might have problems trying to install it in your computer. We have built a Docker image for you.…

GitLab CI/CD: pipeline for the R package avidaR

By Miguel A. Fortuna in Our computational toolbox on 05 Apr 2022

We have created a Pipeline for the R package avidaR which is launched every time we upload some changes to our GitLab remote repository.…

pyLODE: an OWL ontology documentation tool

By Miguel A. Fortuna in Our computational toolbox on 22 Nov 2021

pyLODE is a python tool based on LODE that makes owl ontologies human-readable. It converts an owl file into a html page where the IRIs, descriptions, domain and ranges of the classes, object properties, and datatype properties can be easily read and visualized.…

rdf4r library: build your semantic RDF database from R

By Miguel A. Fortuna in Our computational toolbox on 15 Mar 2021

We have extended the functionality of the rdf4r library, developed for working with Resource Description Framework (RDF) data in the R programming environment, to improve performance when uploading lots of RDF triples to a graphDB triplestore hosted in a remote server.…

Scientific knowledge should be semantically encoded: a graph of nanopublications.

By Miguel A. Fortuna in Our research on 22 Feb 2021

Only with the adquisition of meaning we adquire knowledge. We briefly explain here an approach to use and link nanopublications (i. e., a linked data format for scholarly data publishing) as a unifying framework to represent knowledge in a semantic way.…

Arthur Schopenhauer’s "On authorship and style".

By Miguel A. Fortuna in Setting up our lab on 24 Aug 2020

Should peer review stop being anonymous? Inspired by Arthur Schopenhauer’s "On authorship and style", I now sign my reviews. I would like to share here some excerpts on anonymity in literary journals from this memorable essay.…

Our desktop computers: Raspberry Pi 4 + 2 vertical monitors.

By Miguel A. Fortuna in Setting up our lab on 06 Jul 2020

We do not need powerful desktop computers in our lab, just single connection points in the cloud. Learn how to build a silent, energy-efficient, and dual display workspace.…

Ontology for Avida: a computational approach for performing experimental evolution on digital organisms.

By Miguel A. Fortuna in Our research on 15 Jun 2020

The Ontology for Avida project is developing an integrated vocabulary for the description of the most widely used computational approach for performing experimental evolution on digital organisms.…

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